I have the .rmd file below which I want to knit and create a word document with the table. The issue is that after knitting I do not get a table but numbers one below the other.
If there is other option Im open to it
---
title: "Correlation table"
author: "mk"
date: "17/01/2022"
output: word_document
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
library(scipub)
library(htmlTable)
library(magrittr)
library(mvtnorm)
set.seed(666L)
```
```{r,echo=FALSE,include=FALSE}
dat <- as.data.frame(rmvnorm(50, sigma = toeplitz(3:1)))
colnames(dat) <- c("V1", "V2", "V3")
cortable <- correltable(dat, html = FALSE)
table2 <- as.data.frame(matrix(as.character(cortable$table), nrow = 3))
caption <- cortable[["caption"]]
Means <- formatC(colMeans(dat))
Sds <- formatC(apply(dat, 2L, sd))
table1 <- data.frame(Mean = Means, SD = Sds)
```
```{r, results='asis',echo=FALSE}
css.cell <- matrix("padding: 5px;", ncol = 6L, nrow = 4L)
css.cell[, 1L] <-
paste(css.cell[, 1L], "font-weight: bold;") # <-- bold row names
cbind(table1, table2) %>%
addHtmlTableStyle(css.cell = css.cell) %>%
htmlTable(caption = caption)
```
CodePudding user response:
The simple way would be:
---
title: "Correlation table"
author: "mk"
date: "17/01/2022"
output: word_document
---
knitr::opts_chunk$set(echo = TRUE)
library(scipub)
library(htmlTable)
library(magrittr)
library(mvtnorm)
set.seed(666L)
dat <- as.data.frame(rmvnorm(50, sigma = toeplitz(3:1)))
colnames(dat) <- c("V1", "V2", "V3")
cortable <- correltable(dat, html = FALSE)
table2 <- as.data.frame(matrix(as.character(cortable$table), nrow = 3))
caption <- cortable[["caption"]]
Means <- formatC(colMeans(dat))
Sds <- formatC(apply(dat, 2L, sd))
table1 <- data.frame(Mean = Means, SD = Sds)
css.cell <- matrix("padding: 5px;", ncol = 6L, nrow = 4L)
css.cell[, 1L] <-
paste(css.cell[, 1L], "font-weight: bold;") # <-- bold row names
cbind(table1, table2) %>%
addHtmlTableStyle(css.cell = css.cell) %>%
htmlTable(caption = caption)
df <- cbind(table1, table2)
knitr::kable(df)
you can play with styles in different ways:
kable: https://bookdown.org/yihui/rmarkdown-cookbook/kable.htmlflextable: How to format kable table when knit from .rmd to Word (with bookdown)officeverseset: https://ardata-fr.github.io/officeverse/officer-for-word.html#tables
Regards, Grzegorz
